Colorectal cancer (CRC) is a major global health issue and a leading cause of cancer-related deaths. Early and accurate diagnosis is crucial for improving patient outcomes, yet current meth- ods for analyzing MRI scans—a key tool for tumor detection and staging—often rely on manual segmentation, a process that is time-consuming and prone to variability between observers. This thesis presents a new, AI-driven framework that integrates advanced deep learning techniques with radiomics analysis to enhance the identification and characterization of CRC tumors from MRI scans. We introduce and evaluate three innovative deep learning models, 2D-UNet, 2D-UMamba, and 2D-Swin-UMamba, that automatically segment tumors on MRI images. The models are trained and tested on a carefully curated dataset of rectal cancer patients, ensuring robust performance across diverse imaging conditions. After segmentation, radiomics is used to extract quantitative features that describe tu- mor shape, texture, and intensity. These features are analyzed for correlations with clin- ical factors such as tumor stage, microsatellite instability (MSI), and genetic mutations (KRAS/NRAS/BRAF), offering a more comprehensive and quantitative assessment of CRC tumors. This combined approach has the potential to support more personalized treatment plan- ning and improved patient care. Our experimental results demonstrate that the proposed AI models outperform traditional segmentation methods, achieving higher accuracy as measured by the Dice Similarity Coeffi- cient (DSC) and Intersection over Union (IoU). Furthermore, the radiomics analysis indicates that AI-driven feature extraction can identify imaging biomarkers predictive of clinical out- comes, potentially reducing the need for invasive diagnostic procedures. In general, this re- search contributes to a scalable and clinically relevant framework for automated MRI-based segmentation and radiomic analysis in the management of colorectal cancer.

Colorectal cancer (CRC) is a major global health issue and a leading cause of cancer-related deaths. Early and accurate diagnosis is crucial for improving patient outcomes, yet current meth- ods for analyzing MRI scans—a key tool for tumor detection and staging—often rely on manual segmentation, a process that is time-consuming and prone to variability between observers. This thesis presents a new, AI-driven framework that integrates advanced deep learning techniques with radiomics analysis to enhance the identification and characterization of CRC tumors from MRI scans. We introduce and evaluate three innovative deep learning models, 2D-UNet, 2D-UMamba, and 2D-Swin-UMamba, that automatically segment tumors on MRI images. The models are trained and tested on a carefully curated dataset of rectal cancer patients, ensuring robust performance across diverse imaging conditions. After segmentation, radiomics is used to extract quantitative features that describe tu- mor shape, texture, and intensity. These features are analyzed for correlations with clin- ical factors such as tumor stage, microsatellite instability (MSI), and genetic mutations (KRAS/NRAS/BRAF), offering a more comprehensive and quantitative assessment of CRC tumors. This combined approach has the potential to support more personalized treatment plan- ning and improved patient care. Our experimental results demonstrate that the proposed AI models outperform traditional segmentation methods, achieving higher accuracy as measured by the Dice Similarity Coeffi- cient (DSC) and Intersection over Union (IoU). Furthermore, the radiomics analysis indicates that AI-driven feature extraction can identify imaging biomarkers predictive of clinical out- comes, potentially reducing the need for invasive diagnostic procedures. In general, this re- search contributes to a scalable and clinically relevant framework for automated MRI-based segmentation and radiomic analysis in the management of colorectal cancer.

AI Development on Rectal Cancer by using Medical Imaging.

FARMAN, AMIR MOHAMMAD
2024/2025

Abstract

Colorectal cancer (CRC) is a major global health issue and a leading cause of cancer-related deaths. Early and accurate diagnosis is crucial for improving patient outcomes, yet current meth- ods for analyzing MRI scans—a key tool for tumor detection and staging—often rely on manual segmentation, a process that is time-consuming and prone to variability between observers. This thesis presents a new, AI-driven framework that integrates advanced deep learning techniques with radiomics analysis to enhance the identification and characterization of CRC tumors from MRI scans. We introduce and evaluate three innovative deep learning models, 2D-UNet, 2D-UMamba, and 2D-Swin-UMamba, that automatically segment tumors on MRI images. The models are trained and tested on a carefully curated dataset of rectal cancer patients, ensuring robust performance across diverse imaging conditions. After segmentation, radiomics is used to extract quantitative features that describe tu- mor shape, texture, and intensity. These features are analyzed for correlations with clin- ical factors such as tumor stage, microsatellite instability (MSI), and genetic mutations (KRAS/NRAS/BRAF), offering a more comprehensive and quantitative assessment of CRC tumors. This combined approach has the potential to support more personalized treatment plan- ning and improved patient care. Our experimental results demonstrate that the proposed AI models outperform traditional segmentation methods, achieving higher accuracy as measured by the Dice Similarity Coeffi- cient (DSC) and Intersection over Union (IoU). Furthermore, the radiomics analysis indicates that AI-driven feature extraction can identify imaging biomarkers predictive of clinical out- comes, potentially reducing the need for invasive diagnostic procedures. In general, this re- search contributes to a scalable and clinically relevant framework for automated MRI-based segmentation and radiomic analysis in the management of colorectal cancer.
2024
The growing incidence of rectal cancer has emphasized the need for advanced diagnostic and prognostic methodologies to enhance patient outcomes. This thesis shows the development of an artificial intelligence (AI) system that is designed to analyze rectal cancer through medical imaging. The process begins with using of 3D Slicer software for the precise identification and segmentation of tumor regions in medical images, including MRI and CT scans. This segmentation provides detailed anatomical information necessary for subsequent analytical stages. Following segmentation, a deep learning model is provided to predict various tumor characteristics such as stage, aggressiveness, and potential therapeutic response. The deep learning framework is based on convolutional neural networks (CNNs), selected for their superior performance in image analysis tasks. The model is trained and validated using a comprehensive dataset of annotated medical images, ensuring its robustness and generalizability across different patient populations. The synergy between 3D Slicer for accurate tumor identification and deep learning for predictive analytics aims to improve diagnostic precision and provide insightful prognostic information. This AI-driven approach aspires to assist clinicians in devising informed treatment strategies, thereby contributing to the advancement of personalized medicine in rectal cancer care. This research aims to demonstrate the potential of integrating advanced medical imaging techniques with AI to achieve more precise and efficient cancer management. The findings of this thesis offer a significant contribution to the field of oncology, particularly in rectal cancer, and highlight the importance of interdisciplinary collaboration in fostering medical innovation.
Colorectal cancer (CRC) is a major global health issue and a leading cause of cancer-related deaths. Early and accurate diagnosis is crucial for improving patient outcomes, yet current meth- ods for analyzing MRI scans—a key tool for tumor detection and staging—often rely on manual segmentation, a process that is time-consuming and prone to variability between observers. This thesis presents a new, AI-driven framework that integrates advanced deep learning techniques with radiomics analysis to enhance the identification and characterization of CRC tumors from MRI scans. We introduce and evaluate three innovative deep learning models, 2D-UNet, 2D-UMamba, and 2D-Swin-UMamba, that automatically segment tumors on MRI images. The models are trained and tested on a carefully curated dataset of rectal cancer patients, ensuring robust performance across diverse imaging conditions. After segmentation, radiomics is used to extract quantitative features that describe tu- mor shape, texture, and intensity. These features are analyzed for correlations with clin- ical factors such as tumor stage, microsatellite instability (MSI), and genetic mutations (KRAS/NRAS/BRAF), offering a more comprehensive and quantitative assessment of CRC tumors. This combined approach has the potential to support more personalized treatment plan- ning and improved patient care. Our experimental results demonstrate that the proposed AI models outperform traditional segmentation methods, achieving higher accuracy as measured by the Dice Similarity Coeffi- cient (DSC) and Intersection over Union (IoU). Furthermore, the radiomics analysis indicates that AI-driven feature extraction can identify imaging biomarkers predictive of clinical out- comes, potentially reducing the need for invasive diagnostic procedures. In general, this re- search contributes to a scalable and clinically relevant framework for automated MRI-based segmentation and radiomic analysis in the management of colorectal cancer.
Deep Learning Model
Medical Imaging
AI Development
3D slicer
Tumor Segmentation
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Utilizza questo identificativo per citare o creare un link a questo documento: https://hdl.handle.net/20.500.12608/82085